Did you know that you can also grow a bonsai fruit tree from seed? Imagine having your very own mini orchard right in your own home!

How to Grow a Bonsai Fruit Tree from Seed | A Step by Step Guide

Have you ever marveled at the beauty and artistry of bonsai trees? These miniature masterpieces, with their delicate branches and perfectly pruned foliage, are truly captivating. But did you know that you can also grow a bonsai fruit tree from seed? Imagine having your very own mini orchard right in your own home or garden! Now, don’t go out to your local store right now to get some seeds. Keep reading for some important tips, and then you will be ready to begin.

1) Selecting Seeds

Selecting Seeds for your bonsai fruit tree is the crucial first step in this exciting journey. When it comes to choosing seeds, you have a couple of options. One option is to purchase bonsai-specific seeds from specialized nurseries or online retailers. These seeds are carefully selected and bred specifically for growing into miniature trees with desirable characteristics.

Another option is to use seeds from fruits that you already enjoy eating! This can be a fun and cost-effective way to start your own bonsai fruit tree collection. Simply save the seeds from your favorite fruits like apples, peaches, or cherries, and prepare them for planting. 

Where to Buy Bonsai Seeds

You always want to ensure that you’re starting with high-quality seeds that have a good chance of germinating and producing healthy trees. There are several places available to get bonsai seeds from. One option is to visit your local nursery or garden center. They may have a selection of bonsai seeds for sale, or they may be able to order them for you.

Another option is to look online. There are many reputable websites that specialize in selling bonsai supplies, including seeds. These sites often have a wide variety of seed options available, allowing you to choose the specific type of fruit tree you want for your bonsai.

You can also consider joining a bonsai club or society in your area. These groups often have members who sell or trade their own collected seeds, which can be an excellent way to obtain unique and rare varieties.

Regardless of where you decide to purchase your bonsai seeds, make sure to research the seller and read reviews if possible. This will help ensure that you’re buying from a reputable source and increasing your chances of success.

Using Seeds from Store-Bought Fruit 

If you’re eager to try your hand at growing a bonsai fruit tree, using seeds from store-bought fruit can be a good option. Not only is it convenient, but it also allows you to experiment with different types of fruit trees that may not be readily available as bonsai seed packets.

When selecting seeds from store-bought fruit, look for varieties that have been grown without the use of chemicals or pesticides. This ensures that your bonsai will grow in a healthy and sustainable way.

To extract the seeds, gently remove them from the ripe fruit and clean off any pulp or residue. It’s important to note that not all fruits are suitable for bonsai cultivation. Fruits like apples, cherries, citrus fruits, pomegranates, and peaches are popular choices due to their adaptability to miniaturization techniques.

Once you have cleaned the seeds thoroughly, allow them to dry completely before storing them in a cool and dark place until you’re ready to sow them. When using this method, research the specific seeds you have to see if there are any requirements to help the seed germinate. Some seeds must be stratified before they will germinate, so do your research!

Did you know that you can also grow a bonsai fruit tree from seed? Imagine having your very own mini orchard right in your own home!

2) Preparation 

After you have your seeds, you’ll need to prepare your work station and your seeds for planting.


While you don’t need anything too fancy or expensive, there are a few key tools that will make the process much easier. Here is a list of things you’ll want to have on hand before you start planting your bonsai seeds:

  • A small pot or container
  • A spray bottle
  • Tweezers
  • A plastic dome or plastic bag (to create a greenhouse effect for your seed)
  • Grow lights


Soil is a crucial element when it comes to growing bonsai fruit trees from seed. Choosing the right soil will provide your seeds with the necessary nutrients and drainage they need to thrive.

When selecting soil for your bonsai fruit tree, it’s important to look for a well-draining mix that retains moisture without becoming waterlogged. A blend of organic matter, such as compost or peat moss, along with inorganic materials like perlite or grit can create an ideal balance.

Best Time to Sow Bonsai Fruit Seeds

The best time to sow these seeds depends on the specific type of fruit tree you are trying to grow as a bonsai. Generally, most fruit trees prefer to be sown in the spring or early summer when temperatures are mild and there is plenty of sunlight.

For temperate climate fruit trees like apple or cherry, it’s best to sow the seeds in late winter or early spring. This allows them to take advantage of the upcoming growing season. On the other hand, tropical fruit trees such as citrus may be sown at any time during the year since they thrive in warmer conditions.

3) Stratifying Bonsai Seeds

Stratifying bonsai seeds is an essential step in growing a healthy and vibrant bonsai fruit tree. This process helps break the seed’s dormancy, allowing it to germinate more easily. So, what exactly does stratification mean? Essentially, it involves subjecting the seeds to specific conditions that mimic their natural environment during winter.

How to Stratify Bonsai Seeds

To begin stratifying your bonsai seeds, you’ll need a few basic materials. First, gather some moistened peat moss or vermiculite. Next, place the seeds inside a sealable plastic bag with the damp medium. Make sure to label each bag so you know which type of seed is inside.

The ideal temperature for stratification depends on the species of fruit tree you’re working with. Most varieties require cool temperatures between 32-41°F (0-5°C) for several weeks or even months. However, some may have different requirements, so it’s important to research individual plant species before starting this process.

4) Planting Prepared Seeds

Now that you’ve gone through the process of stratifying your bonsai fruit seeds, it’s time to plant them and watch your miniature tree take root!

First, grab the container you’ve chosen for your tree. Next, carefully remove your prepared seeds from their stratification medium. Gently place each seed onto the soil surface, spacing them out evenly. Be sure not to bury them too deep; just lightly press them into the soil. Once all your seeds are planted, cover them with a thin layer of fresh soil or fine-grade sand to protect and insulate them.

Afterward, water gently but thoroughly. Avoid overwatering as this can lead to rotting of the seed before it’s had a chance to root! Place your newly planted seeds in a warm location where they will receive indirect sunlight. This will help stimulate germination and healthy growth.

Now it’s time for patience! Keep an eye on your bonsai fruit tree seeds and provide consistent care by maintaining proper watering and light conditions.

5) Caring for Newly Planted Seeds

Once you have planted your bonsai fruit seeds, it’s crucial to provide the right care to ensure their successful growth.


When watering your bonsai fruit tree seeds, it’s best to use a spray bottle or a fine mist nozzle on your watering can. This helps to distribute water evenly and prevents excessive saturation of the soil. Avoid pouring large amounts of water at once, as this can lead to puddles forming in the pot and it can disrupt the root growing process.


Different fruit tree species have varying light requirements. Some may prefer full sun exposure, while others may do better in partial shade. To determine the ideal lighting conditions for your specific type of bonsai fruit tree, research its natural habitat and try to replicate those conditions as closely as possible. This might mean placing your bonsai near a south-facing window or using artificial grow lights if you don’t have access to sufficient natural sunlight.

In addition to the intensity of light, the duration also plays an essential role. Most fruit trees require at least 6-8 hours of direct sunlight each day. However, be careful not to place your young seedlings directly under the scorching midday sun without any protection.

Temperature and Humidity

Most bonsai fruit trees prefer a warm, semi-humid climate. Different species may have specific temperature and humidity requirements, so use this guide as a general guideline, but make sure to research your specific type of tree to know how to keep your plant happy.. Generally, maintaining a temperature between 60-80 degrees Fahrenheit and between 50-70% humidity  is ideal for germination and growth.

6) Caring for Germinated Bonsai Seeds

After your beautiful bonsai tree has sprouted, taking care of the little plant is crucial to keep it healthy and growing. Here are some tips to help you do that.


Proper nutrition ensures that your tree has the necessary nutrients to thrive and produce healthy fruits. Use a bonsai-specific fertilizer at quarter-strength until your plant is established, and then gradually go up to full strength. Baby bonsai trees are pretty delicate, and giving them too much too soon will burn them quickly.

Thinning Out

If you’ve planted more than one seed in a container, thinning out will be important for your plant to survive. Once your bonsai fruit tree seeds have germinated and started to grow, remove weaker or crowded plants to ensure that the remaining ones have enough space, nutrients, and light to thrive.

Thinning out is crucial for maintaining a healthy and balanced bonsai. It allows the stronger seedlings to develop into robust trees with well-spaced branches. By removing excess growth, you also prevent competition among the plants, which can lead to stunted growth or even death.


When the seedlings have grown strong enough, usually after 6-12 months, it’s time to transplant them into individual pots or containers. Choose a pot that is slightly larger than the current one to give the roots room to spread out.

Before removing the seedling from its current container, gently loosen the soil around it with your fingers or a small tool. Carefully lift the seedling out, taking care not to damage its delicate roots.

Place some fresh bonsai soil mixture in the bottom of the new pot. Then, carefully place the seedling in the center of the pot and fill around it with more soil mixture until it reaches just below the rim of the pot. Only fill soil up to where the soil level was before you moved the tree. Do not bury more of the stem than was buried before.

Gently tap down on all sides of the pot to settle any air pockets and ensure good contact between roots and soil. Water your plant thoroughly, allowing excess water to drain out of the pot.

After transplanting, place your newly potted bonsai fruit tree in a location where it will receive adequate sunlight for optimal growth. Monitor its progress closely and make sure to provide regular watering as needed.

Caring for a New Bonsai

One your bonsai tree is transplanted into its permanent home, you will simply care for it like you would any other bonsai tree! Follow a regular watering schedule and fertilizing schedule, monitor for pests, and keep the plant and soil clean. Your bonsai tree will not set fruit for a few years, but it will give you an abundance of beautiful leaves to enjoy!

Final Thoughts

Growing a bonsai fruit tree from seed can be a rewarding and fulfilling experience. It requires patience, dedication, and careful attention to detail, but it is so worth it! Try it out and see how many bonsai trees you can grow from seed!

More Bonsai Resources

At The Bonsai Resource Center, our goal is to equip you with everything you need to grow and maintain a truly beautiful bonsai tree. This is our passion, and we want it to be yours as well! Whether you are a bonsai beginner or are looking to hone your skills, check out our other articles and visit our shop for all your bonsai needs!


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